The University of Sheffield
Department of Molecular Biology and Biotechnology

MBB News

University Open Days in 2013

The next University Open Days are on June 15, July 9, July 10 and September 14 2013. We would prefer you to register in advance so we can plan numbers but this is not strictly necessary. You will have a chance to hear about MBB and have a tour of our teaching facilities. There are many other things on display at the open days, including our sister biology departments, accommodation and campus tours, and information about student life.

The Department also has open days for students who have applied via UCAS and accompanying people. Because of space restrictions these are not open to other visitors. Please contact us for more information via the link on the left.

New treatment for organophosphorus poisoning

Organophosphorus (OP) agents are used widely as pesticides, although their use has been banned in much of the developed world. It is estimated that about 200,000 people die every year from OP poisoning. There also remain large stockpiles of OP agents such as  sarin and VX, deleloped as nerve gases. There is an urgent need to develop scavengers which can inactivate OP agents, either immediately after accidental dosing or prophylactically for soldiers in danger of attack by nerve gases. Prof Mike Blackburn of MBB has been part of a collaborative team that recently reported (Proceedings of the National Academy of Sciences of the USA, 2013, vol 110(4), page 1243 the development of such a scavenger, which effectively protected mice against the nerve agent VR. More details can be found from the University of Sheffield's news feed.

Another new staff appointmentSherif El-Khamisy

We are delighted to report that Dr Sherif El-Khamisy will be joining us from the University of Sussex in the summer. He works on repair of DNA single-strand breaks, using yeast and whole animal models. Single-strand breaks are responsible for a range of human diseases, in particular neurological diseases.

Congratulations to Roger Anderson!

We are delighted to announce that in December 2012, our Director of Studies, Deputy Head of Department and head of teaching, Roger Anderson, was promoted to Professor, in recognition of his significant role in teaching and administration within the Department and across the University over many years. He was also elected a Fellow of the Society of Biology in January 2013, awarded to those who have made 'a prominent contribution to the advancement of biological sciences'.

Exciting research from MBB in 2012

Staff from MBB have published four papers during 2012 in Proceedings of the National Academy of Sciences of the USA (PNAS). This journal only publishes exceptional science, and these papers make important contributions.

MBB wins Green award

The University recently started a 'Labs Switch Off' campaign, encouraging us all to switch off unwanted equipment and thus save electricty. MBB are the first winners, having reduced our energy consumption by 14% compared to the same time last year.

Researchers' Night in the Festival of the Mind

The University of Sheffield opened its doors in September 2012 for the Festival of the Mind. As part of this, MBB researchers took part in Researchers' Night on September 28, with a varied set of contributions, covering (left to right) the use of Atomic Force Microscopy to investigate structures in bacteria, extracting DNA from strawberries, the history of the discovery of penicillin (in Sheffield), and whether life arrived on earth from outer space.

atomic force microscopystrawberry DNA penicillin

Graduation party 2012graduates of 2012

As usual, we celebrated our new graduates with a party in July: a celebration lunch, speeches, prizes, tours of the Department, the graduation ceremony itself, and of course lots of photos. To see many more pictures, visit our Facebook page.

New academic staff appointed...

MBB have appointed three new lecturers in the department, who will take up their posts in the next few months. Matt Johnson is already here, and works on photosynthesis in plants. Stéphane Mesnage will be joining us very shortly, and works on bacterial cell walls. And Robert Fagan will be joining us in the New Year. More details shortly...

...and a new Head of Department

We are happy to report that Prof Dave Hornby has done his bit for the Department and has been replaced by the new Head, Prof Alastair Goldman (the one in the tasteful green and pink gown in the photo). Dave is smiling broadly over his shoulder.

New insight into protein production

Prof Stuart Wilson in MBB, in collaboration with scientists at Harvard University, has published important research in the journal Nature Communications (2012, Vol 3 page 1006). In humans, DNA is copied to RNA in the nucleus, and the RNA then is exported from the nucleus into the cytoplasm to be made into protein. Errors in this process lead to a wide range of diseases including motor neuron disease, myotonic dystrophy and cancer. His work explains how RNA is tagged to allow it to leave the nucleus. He comments: "Until now, it has not been clear how the cell knows when the mRNA should be given a passport allowing passage to the cytoplasm. Now we have identified how the passport is issued." It turns out that it requires a protein called TREX.

Science Brainwaves receives the Sir Walter Bodmer awardbrainwaves - strawberry DNA

Science Brainwaves is an enthusiastic group of science communicators, made up of undergraduate, Masters and PhD students from science departments at the University of Sheffield, as well as postdocs. They organise a wide variety of activities in and around Sheffield, with the aim of showing that science is fun and that scientists are not mad boffins in white coats. They are a branch of the British Science Association, in fact the most active group outside London, which is why they were awarded the 2012 Sir Walter Bodmer Award, recognising the achievement of volunteers within the BSA. The awarding committee gave special praise to Tacita Nye, a PhD student from MBB, who chaired it in 2011-12 until she stood down in order to write up her PhD thesis.

Science Brainwaves organises a wide range of outreach activities for schoolchildren, including the popular A question of taste, in collaboration with the University of Sheffield and the Association for Science and Discovery Centre, supported by the Wellcome Trust, in which students carry out analysis of their own DNA to investigate their sense of taste. They have organised sell-out events for the general public, including pub quizzes, film nights, a radio show at Sheffield Live, and hands-on talks such as Weird physics, Science of cocktails, Botany of gin and Better looking, better loving.

For more details, see our more detailed news item, visit Brainwaves’ web site, or view their excellent video.

Science Brainwaves is part of the British Science Association, Registered Charity 212479 and SCO39236.

Developing links with the University of SharjahProfs Fowler and Saadoun at graduation

Staff from MBB, led by Emeritus Prof Mike Fowler (programme director for the course), have been helping the University of Sharjah develop a new degree programme in Biotechnology, as a collaborative venture with the University of Sheffield. The first 8 graduates from the 4-year course graduated in June 2012, and the course continues to grow in popularity, with well over 360 currently enrolled. We are delighted to welcome some students from the course to Sheffield over the summer of 2012, who are visiting as part of the Erasmus programme.

Weam Seed and the VCThe course has been awarded an International Recognition Certificate by the Society of Biology, and is the first international course to receive such recognition. UK-based external examiners have visited Sharjah, reported on the first cohort to graduate, and approved the standards of the course.

The University of Sharjah, UAESharjah is the third largest emirate within the UAE and borders Dubai and Abu Dhabi. The University of Sharjah was founded in 1997; the Biotechnology course is the flagship course of the Department of Applied Biology and is now the largest course within the College of Sciences.

Senate Award for teaching for Dr Anderson

We are delighted to report that Dr Roger Anderson, our Head of Teaching, was recently awarded a 2012 Senate Award for his sustained contributions to teaching and learning in the University.

Research grants to MBB staff

In June 2012, BBSRC announced the recipients of their Winter 2011 funding round, among whom are Profs Kathryn Ayscough, Stuart Wilson and Mike Williamson, as well as two other colleagues from other Departments.

Latest careers data for MBB graduates

Data are now available for undergraduate students graduating in summer 2011. Students are surveyed in the December following their graduation. The results show a very consistent pattern over the last few years, with about 90% of graduates in work or further study (a very high figure by comparison to national averages), and 80% of these in graduate level jobs. Graduates continue to find jobs in major biology-based employers such as GE Healthcare and Sanofi-Aventis. There is a trend for an increasing number of our graduates to go on to further study. Of the 2011 graduates, 22 went on to PhDs, 10 to Masters courses and 4 to PGCEs. Further details can be found on our Careers page.

Green Impact award for MBB

MBB won a bronze award for Green Impact at a ceremony led by the Vice-Chancellor in April 2012. Green Impact is a flagship project run by the National Union of Students, designed to help staff change environmental practices, and the award recognises the effect already achieved by practical changes in working practices.

MBB student successSav and Charlie receiving dance award

We congratulate final year student Sav Cardamone and his dance partner Charlie Lowe. At the Inter-Varsity Dance Competition in Blackpool on March 4 2012, they won the award for Varsity Most Promising Couple as well as winning in Ballroom and Latin categories.

Breakthrough in fight against meliodosis

Meliodosis is a disease that affects millions of people in South East Asia and North Australia and is one of the top three causes of death by infectious disease in some regions. It is caused by the bacterium Burkholderia pseudomallei, but the molecular basis of pathogenicity is poorly defined. An international team led by Prof David Rice of MBB and including scientists from Malaysia and Singapore, as well as other research labs in the UK, has stumbled across a previously unknown toxin while investigating proteins of unknown function in B. pseudomallei.

This work, published in the journal Science in the 11 November 2011 issue (Vol 334, page 821), identifies an enzyme called Burkholderia Lethal Factor 1 as the toxin, and shows that it has a similar structure to a toxin produced by the well-known bacterium Escherichia coli. Crucially, the structures of their active sites are very similar (Figure). This provided the crucial clue as to how it works: it turns out that although the reaction it catalyses is identical (deamidation of a glutamine), the biological consequence is quite different. In B. pseudomallei, it deamidates a protein required for translation of RNA into protein, and thereby halts protein synthesis in infected human cells. This work paves the way for the design of drugs against meliodosis. The team are also working on the possibility of using the toxin to target cancer cells and kill them.

burkholderia toxin

This figure shows a comparison of the active sites of B. pseudomallei toxin (blue) and the related E. coli toxin (red). The crucial catalytic residues are Cys94 and His106, which are in very similar spatial positions.

100% success in national student satisfaction survey

The results for the 2011 Student Satisfaction Survey are now out. MBB scored a remarkable 100% score for overall student satisfaction over all its courses: see this link for more detail.

Research grants awarded in 2011

To do research, you need people, equipment and chemicals. These all cost money, and most research funding is obtained from research grants, which are provided by government and charities as a result of a competitive process, with the judges being other research scientists. This means that obtaining a research grant is recognition that your research is seen as internationally excellent. We are happy to announce grant funding in 2011 spanning a wide range of research areas in the department:

Congratulations to new PhD graduates 2011

In 2011, 39 PhD students graduated (compared to 24 in 2010!), and we congratulate all of them on their hard work and achievement.

Major new undergraduate text from Departmenthow_proteins_workk

Prof Mike Williamson published the major textbook called How Proteins Work in July 2011. This is the second important textbook to be written by staff in MBB, following on from Prof Pete Sudbery's Human Genetics (see below).

MBB to provide science education in national project

Postgraduate students in MBB have obtained support for an innovative science education project. In association with the UK Association for Science and Discovery Centres and the Wellcome Trust, they will deliver a workshop to school pupils in Sheffield, exploring their ability to taste a bitter chemical called phenylthiocarbamide (PTC). This is determined by genetic makeup, and about 30% of people cannot taste it at all. The workshop will involve DNA isolation, PCR (polymerase chain reaction) and gel electrophoresis. The project is to be delivered by Science Brainwaves, whose Director is a PhD student in MBB. For more detail about Science Brainwaves, see the science outreach link below, and for more on this story see this link.

MBB teacher wins Students’ Union Personal Tutor of the Year AwardRosie Staniforth

At their annual Academic Awards ceremony on May 12 2011, The Students’ Union presented an award for Personal Tutor of the Year to Dr Rosie Staniforth, a lecturer in MBB. One of her tutees commented ‘She is always available for personal one-to-one sessions and was incredibly supportive of any decisions I have made, both academic and personal.’ Dr Staniforth said "It is a great honour to receive this award. I am extremely touched but also highly encouraged to feel that I can make a difference simply by providing the care and attention they so very much deserve." The award follows one in 2009 given to Dr Charlie McDonald from MBB.

Dr Gilmour introduces microbiology to schoolchildren

Dr Jim Gilmour introduced a group of 90 13- and 14-year olds to the science of microbiology, as part of a program of encouraging local schoolchildren to consider a career in medicine. Pupils learnt about good and bad microbes. The session received a writeup in the Sheffield Star. See this link for more details.

Congratulations on MBB promotion

im-e-h-06.jpgWe congratulate Dr Ewald Hettema on being promoted to Reader, in recognition of his outstanding research on peroxisomes, which are organelles found in almost all eukaryotic cells that carry out a range of both degradative and synthetic reactions.

A busy year of science outreach activities

2010/11 has seen MBB staff and students involved in a wide range of outreach activities. We have delivered creative science workshops aimed at exciting primary school pupils about science. These have covered topics such as microbes and bacteria, DNA and proteins, cells and their structures, microscopy, the use of animals in research, evolution and natural selection, as well as genetic manipulations. The photo below shows a product from a “Design a Bug” workshop, creating bacteria adapted to particular environments. In the workshops we have worked with artists from Art in the Park to enhance pupils’ experience. Pupils have produced songs, poems, short dramas, artworks and models based on the science.

design_a_bug

Dr Sandrine Soubes collaborated with the theatre company the Babbling Vagabonds to deliver science and theatre workshops exploring the topic of Synthetic Biology in two local primary schools. The project engaged over 150 Y6 pupils who were engaged for a whole week of science and art workshops. In each school, pupils delivered a performance to the rest of the schools and parents.

At the Sheffield Children’s Festival in June 2010 we delivered science workshops to families on a busy Saturday. These were run with the help of Science Brainwaves, a group of postgraduate and undergraduate students from Sheffield, mainly from MBB, whose aim is to educate and entertain – to communicate science.

A group of postgraduates, mainly from MBB, have got together to form the Café Forum, a regular venue for presentation and lively discussion of cross-disciplinary science.

For more details and pictures click here.

Research Highlights from MBB in 2010

Members of the Department published about 90 papers in research journals in 2010. We have selected three, which are explained in more detail in the link below. The first, from Prof Sudbery, decribes how the pathogen Candida albicans pushes its way into the bloodstream to cause lethal infeactions. The second, from Prof Foster, describes how the spherical bacterium Staphylococcus aureus ‘knows’ in which direction to split in half. And the third, from Prof Williamson, describes how the binding of one protein (UBA) to another (ubiquitin) is regulated by dimerisation, faults in which lead to Paget’s disease of bone.

papers 2010

MBB develops new spin-out company

Prof Simon Foster is the founder of Absynth Biologics, a company developing vaccines and antibodies against the MRSA superbug Staphylococcus aureus. In 2010, Absynth signed an agreement with the German company MorphoSys AG to develop therapeutic targets.

We took our first venture into spin-out companies back in 2001 with Asterion, a company developing proteins that bind to cytokine receptors as treatments for a wide range of disorders, involving Prof Pete Artymiuk as a co-founder.

BioServ UK was also launched in early 2009, a company that produces quality antibodies and recombinant proteins. The company is based in the Department, with Dr Lynda Partridge as Scientific Director and Dr Simon Smith (previously a Departmental PhD student) as Technical Director. Both companies are still going strong, not a bad record in the Biotech market.

Congratulations to Prof Peter Horton on being elected FRS

Prof Peter Horton FRS We congratulate Professor Horton as the second MBB academic to be awarded an FRS in the area of photosynthesis (see details of Prof Hunter’s award below). An FRS is the highest accolade for British scientists.

Prof Horton has wide interests in photosynthesis. A major interest has been in working out how plants respond to excess light. In this era of global climate change, excess light is a major problem, which can lead to severe damage to plant tissues. This interest has led to his being involved in Project Sunshine, a major initiative by the University of Sheffield to tackle the food and energy needs of the world in an integrated way.

Research grants awarded in 2010

MBB received research grants totalling over £4 million in 2010. These include:

Congratulations to new PhD graduates 2010

In 2010, we saw 24 PhD students graduate, and we congratulate all of them on their hard work and achievement.

New edition of popular textbook on Human Genetics Feb 2010

Prof Sudbery displays his book MBB’s Professor Peter Sudbery has brought out the third edition of his popular textbook, Human Molecular Genetics, in collaboration with his son Ian.

Congratulations to Prof Neil Hunter on being elected FRS

Prof Neil Hunter We congratulate Professor Neil Hunter on his election to FRS. Prof Hunter works on photosynthesis, with particular interests in bacterial photosynthesis and the biosynthesis of chlorophyll. His work is therefore of great relevance to development of greener technologies and cleaner energy, as is being developed for example in the University of Sheffield’s Project Sunshine.