Matt Johnson Publications
Full list of Publications
Publications
Journal articles
- Energetic driving force for LHCII clustering in plant membranes. Science Advances, 9(51).
- Twisted carotenoids do not support efficient intramolecular singlet fission in the orange carotenoid protein. The Journal of Physical Chemistry Letters, 14(26), 6135-6142.
- Cryo-EM structure of the four-subunit
Rhodobacter sphaeroides
cytochrome
bc
1
complex in styrene maleic acid nanodiscs. Proceedings of the National Academy of Sciences, 120(12).
- Zeta-carotene isomerase (Z-ISO) Is required for light-independent carotenoid biosynthesis in the cyanobacterium synechocystis sp. PCC 6803. Microorganisms, 10(9). View this article in WRRO
- Cryo-EM structures of the Synechocystis sp. PCC 6803 cytochrome b6f complex with and without the regulatory PetP subunit. Biochemical Journal. View this article in WRRO
- Changes in supramolecular organization of cyanobacterial thylakoid membrane complexes in response to far-red light photoacclimation.. Sci Adv, 8(6), eabj4437.
- FRET measurement of cytochrome bc1 and reaction centre complex proximity in live Rhodobacter sphaeroides cells. Biochimica et Biophysica Acta (BBA) - Bioenergetics, 1863(2), 148508-148508.
- Inhibition of Arabidopsis stomatal development by plastoquinone oxidation. Current Biology.
- Comparative proteomics of thylakoids from
Arabidopsis
grown in laboratory and field conditions. Plant Direct, 5(10).
- Membrane-dependent heterogeneity of LHCII characterized using single-molecule spectroscopy. Biophysical Journal.
- Genes linking copper trafficking and homeostasis to the biogenesis and activity of the cbb3-type cytochrome c oxidase in the enteric pathogen Campylobacter jejuni. Frontiers in Microbiology, 12. View this article in WRRO
- Cytochrome b6f – orchestrator of photosynthetic electron transfer. Biochimica et Biophysica Acta (BBA) - Bioenergetics. View this article in WRRO
- Dynamic thylakoid stacking and state transitions work synergistically to avoid acceptor-side limitation of photosystem I. Nature Plants. View this article in WRRO
- Developmental acclimation of the thylakoid proteome to light intensity in Arabidopsis. The Plant Journal. View this article in WRRO
- Xanthophyll carotenoids stabilise the association of cyanobacterial chlorophyll synthase with the LHC-like protein HliD. Biochemical Journal. View this article in WRRO
- Just the essentials: photoprotective energy dissipation pared-down. Journal of Experimental Botany, 71(12), 3380-3382.
- Modeling the Role of LHCII-LHCII, PSII-LHCII, and PSI-LHCII Interactions in State Transitions. Biophysical Journal, 119(2), 287-299.
- The relevance of dynamic thylakoid organisation to photosynthetic regulation. Biochimica et Biophysica Acta (BBA) - Bioenergetics, 1861(4), 148039-148039.
- Cryo-EM structure of the spinach cytochrome b6 f complex at 3.6 Å resolution. Nature, 575(-), 535-539. View this article in WRRO
- Dissecting the cytochrome c(2)–reaction centre interaction in bacterial photosynthesis using single molecule force spectroscopy. Biochemical Journal, 476(15), 2173-2190. View this article in WRRO
- Membrane organization of photosystem I complexes in the most abundant phototroph on Earth. Nature Plants, 5(8), 879-889. View this article in WRRO
- Dynamic thylakoid stacking is regulated by LHCII phosphorylation but not its interaction with PSI. Plant Physiology, 180(4), 2152-2166. View this article in WRRO
- Single-molecule study of redox control involved in establishing the spinach plastocyanin-cytochrome b6f electron transfer complex. Biochimica et Biophysica Acta (BBA) - Bioenergetics, 1860(7), 591-599. View this article in WRRO
- Turning the Challenge of Quantum Biology On its Head Biological Control of Quantum Optical Systems. Faraday Discussions, 216, 57-71. View this article in WRRO
- Correlated fluorescence quenching and topographic mapping of Light-Harvesting Complex II within surface-assembled aggregates and lipid bilayers. Biochimica et Biophysica Acta (BBA) - Bioenergetics, 1859(10), 1075-1085. View this article in WRRO
- Author Correction: Dynamic thylakoid stacking regulates the balance between linear and cyclic photosynthetic electron transfer. Nature Plants, 4(6), 391-391. View this article in WRRO
- Metabolic regulation of photosynthetic membrane structure tunes electron transfer function. Biochemical Journal, 475(7), 1225-1233. View this article in WRRO
- Effect of ammonium and high light intensity on the accumulation of lipids in Nannochloropsis oceanica (CCAP 849/10) and Phaeodactylum tricornutum (CCAP 1055/1). Biotechnology for Biofuels, 11(1), 60-60. View this article in WRRO
- Dynamic thylakoid stacking regulates the balance between linear and cyclic photosynthetic electron transfer. Nature Plants, 4, 116-127. View this article in WRRO
- A four state parametric model for the kinetics of the non-photochemical quenching in Photosystem II. Biochimica et Biophysica Acta (BBA) - Bioenergetics, 1858(10), 854-864.
- Cryo-FIB Lift-out Sample Preparation Using a Novel Cryo-gripper Tool. Microscopy and Microanalysis, 23(S1), 844-845.
- Photosynthesis. Essays In Biochemistry, 60(3), 255-273. View this article in WRRO
- Atomic detail visualization of photosynthetic membranes with GPU-accelerated ray tracing. Parallel Computing, 55, 17-27. View this article in WRRO
- An intact light harvesting complex I antenna system is required for complete state transitions in Arabidopsis. Nature Plants, 1(12). View this article in WRRO
- Visualizing the dynamic structure of the plant photosynthetic membrane. Nature Plants, 1(11).
- Interference lithographic nanopatterning of plant and bacterial light-harvesting complexes on gold substrates. Interface Focus, 5(4). View this article in WRRO
- Nanodomains of Cytochrome b6f and Photosystem II Complexes in Spinach Grana Thylakoid Membranes. The Plant Cell, 26(7), 3051-3061. View this article in WRRO
- Reversible Switching between Nonquenched and Quenched States in Nanoscale Linear Arrays of Plant Light-Harvesting Antenna Complexes. Langmuir, 30(28), 8481-8490.
- Integration of energy and electron transfer reactions in plant thylakoids. Biochimica et Biophysica Acta (BBA) - Bioenergetics, 1837, e122-e122.
- Disentangling the low-energy states of the major light-harvesting complex of plants and their role in photoprotection. Biochimica et Biophysica Acta - Bioenergetics.
- Photosynthesis and the environment. Photosynthesis Research, 119(1-2), 1-2.
- The Specificity of Controlled Protein Disorder in the Photoprotection of Plants. BIOPHYSICAL JOURNAL, 105(4), 1018-1026.
- Changes in the energy transfer pathways within photosystem II antenna induced by xanthophyll cycle activity. Journal of Physical Chemistry B, 117(19), 5841-5847.
- Rethinking the existence of a steady-state Δψ component of the proton motive force across plant thylakoid membranes. Photosynthesis Research, 1-10. View this article in WRRO
- Elevated ΔpH restores rapidly reversible photoprotective energy dissipation in Arabidopsis chloroplasts deficient in lutein and xanthophyll cycle activity. Planta, 235(1), 193-204.
- Controlled disorder in plant light-harvesting complex II explains its photoprotective role. Biophysical Journal, 102(11), 2669-2676.
- Higher plant photosystem II light-harvesting antenna, not the reaction center, determines the excited-state lifetime - Both the maximum and the nonphotochemically quenched. Biophysical Journal, 102(12), 2761-2771.
- Exciton annihilation as a probe of the light-harvesting antenna transition into the photoprotective mode. Chemical Physics, 404, 123-128.
- Natural light harvesting: principles and environmental trends. Energy & Environmental Science, 4(5), 1643-1643.
- Photoprotective energy dissipation involves the reorganization of photosystem II light-harvesting complexes in the grana membranes of spinach chloroplasts. Plant Cell, 23(4), 1468-1479.
- Light-harvesting antenna composition controls the macrostructure and dynamics of thylakoid membranes in Arabidopsis. Plant Journal.
- Photoprotection in plants involves a change in lutein 1 binding domain in the major light-harvesting complex of photosystem II. Journal of Biological Chemistry, 286(31), 27247-27254.
- Changes in thylakoid membrane thickness associated with the reorganization of photosystem II light harvesting complexes during photoprotective energy dissipation. Plant Signaling and Behavior, 6(9), 1386-1390.
- Origin of absorption changes associated with photoprotective energy dissipation in the absence of zeaxanthin. Journal of Biological Chemistry, 286(1), 91-98.
- Restoration of rapidly reversible photoprotective energy dissipation in the absence of PsbS protein by enhanced ΔpH. Journal of Biological Chemistry, 286(22), 19973-19981.
- Acclimation- and mutation-induced enhancement of PsbS levels affects the kinetics of non-photochemical quenching in Arabidopsis thaliana. Planta, 233(6), 1253-1264.
- The photoprotective molecular switch in the photosystem II antenna. Biochimica et Biophysica Acta - Bioenergetics.
- Far-red light-regulated efficient energy transfer from phycobilisomes to photosystem i in the red microalga Galdieria sulphuraria and photosystems-related heterogeneity of phycobilisome population. Biochimica et Biophysica Acta - Bioenergetics, 1807(2), 227-235.
- Visualising the mobility and distribution of chlorophyll-proteins in higher plant thylakoid membranes: effects of photoinhibition and protein phosphorylation. The Plant Journal.
- Visualizing the mobility and distribution of chlorophyll proteins in higher plant thylakoid membranes: Effects of photoinhibition and protein phosphorylation. Plant Journal, 62(6), 948-959.
- Xanthophylls as modulators of membrane protein function. Archives of Biochemistry and Biophysics, 504(1), 78-85.
- A theoretical investigation of the photophysical consequences of major plant light-harvesting complex aggregation within the photosynthetic membrane. Journal of Physical Chemistry B, 114(46), 15244-15253.
- Effect of xanthophyll composition on the chlorophyll excited state lifetime in plant leaves and isolated LHCII. Chemical Physics, 373(1-2), 23-32.
- Arabidopsis plants lacking PsbS protein possess photoprotective energy dissipation.. Plant J, 61(2), 283-289.
- Photoprotective energy dissipation in higher plants involves alteration of the excited state energy of the emitting chlorophyll(s) in the light harvesting antenna II (LHCII). Journal of Biological Chemistry, 284(35), 23592-23601.
- Dynamics of higher plant photosystem cross-section associated with state transitions. Photosynthesis Research, 99(3), 173-183.
- The zeaxanthin-independent and zeaxanthin-dependent qE components of nonphotochemical quenching involve common conformational changes within the photosystem II antenna in Arabidopsis. Plant Physiology, 149(2), 1061-1075.
- The photosystem II light-harvesting protein Lhcb3 affects the macrostructure of photosystem II and the rate of state transitions in Arabidopsis. Plant Cell, 21(10), 3245-3256.
- The xanthophyll cycle pool size controls the kinetics of non-photochemical quenching in Arabidopsis thaliana.. FEBS Lett, 582(2), 262-266.
- Induction of efficient energy dissipation in the isolated light-harvesting complex of photosystem II in the absence of protein aggregation. Journal of Biological Chemistry, 283(43), 29505-29512.
- Photosynthetic acclimation: Does the dynamic structure and macro-organisation of photosystem II in higher plant grana membranes regulate light harvesting states?. FEBS Journal, 275(6), 1069-1079.
- The Lhcb protein and xanthophyll composition of the light harvesting antenna controls the ΔpH-dependency of non-photochemical quenching in Arabidopsis thaliana. FEBS Letters, 582(10), 1477-1482.
- Elevated zeaxanthin bound to oligomeric LHCII enhances the resistance of Arabidopsis to photooxidative stress by a lipid-protective, antioxidant mechanism.. J Biol Chem, 282(31), 22605-22618.
- Elevated zeaxanthin bound to oligomeric LHCII enhances the resistance of Arabidopsis to photo-oxidative stress by a lipid-protective, anti-oxidant mechanism. PHOTOSYNTH RES, 91(2-3), 319-319.
- Single-Molecule Detection of the Encounter and Productive Electron Transfer Complexes of a Photosynthetic Reaction Center. Journal of the American Chemical Society.
- De novo design of proteins housing excitonically coupled chlorophyll special pairs. Nature Chemical Biology.
- Photosynthetic control at the cytochrome b6f complex. The Plant Cell.
- PGR5 is required to avoid photosynthetic oscillations during light transitions. Journal of Experimental Botany.
-
STN7 is not essential for developmental acclimation of Arabidopsis to light intensity. The Plant Journal.
- High cyclic electron transfer via the PGR5 pathway in the absence of photosynthetic control. Plant Physiology.
- ΔpH dominates proton motive force in plant photosynthesis in both low and high light. Plant Physiology.
- A recombineering pipeline to clone large and complex genes in Chlamydomonas. The Plant Cell.
- Publisher Correction: Dynamic thylakoid stacking and state transitions work synergistically to avoid acceptor-side limitation of photosystem I. Nature Plants.
Conference proceedings papers
- Light-Harvesting Complex II in Controlled Architectures: Visualizing Changes in Fluorescence Lifetimes. Biophysical Journal, Vol. 112(3) (pp 441a-441a)
- Redesigning Photosynthetic Membranes: Development of Bio-Inspired Photonic Nanomaterials. Biophysical Journal, Vol. 110(3) (pp 19a-19a)
Preprints
- Molecular architecture of thylakoid membranes within intact spinach chloroplasts, Cold Spring Harbor Laboratory.
- Tethering ferredoxin-NADP+reductase to photosystem I promotes photosynthetic cyclic electron transfer, Cold Spring Harbor Laboratory.
- PGR5 is required to avoid photosynthetic oscillations during light transitions, Cold Spring Harbor Laboratory.
- De novo design of energy transfer proteins housing excitonically coupled chlorophyll special pairs, Research Square Platform LLC.
- Energetic driving force for LHCII clustering in plant membranes, Cold Spring Harbor Laboratory.
- Twisted carotenoids do not support efficient intramolecular singlet fission in the orange carotenoid protein, arXiv.
- Supercharged PGR5-dependent cyclic electron transfer compensates for mis-regulated chloroplast ATP synthase, Cold Spring Harbor Laboratory.
- RAS-inhibiting biologics identify and probe druggable pockets including an SII-α3 allosteric site, Cold Spring Harbor Laboratory.
- A recombineering pipeline to clone large and complex genes in Chlamydomonas, Cold Spring Harbor Laboratory.
- Modelling the role of LHCII-LHCII, PSII-LHCII and PSI-LHCII interactions in state transitions, Cold Spring Harbor Laboratory.