Dr Ian Lidbury
School of Biosciences
Lecturer/Royal Society University Research Fellow
+44 114 222 4621
Full contact details
School of Biosciences
Alfred Denny Building
- BBSRC Discovery Fellow, Animal and Plant Sciences, University of Sheffield, UK (2020-present)
- Researcher-CoI, School of Life Sciences, University of Warwick, UK (2019-2020)
- Postdoctoral Research Fellow in Environmental Microbiology , Life Sciences, University of Warwick, UK (2015-2019)
- PhD in Marine Microbiology, Life Sciences, University of Warwick, UK (2011-2015)
- MRes in Marine Microbiology, The Marine Biological Association of the UK & Plymouth University (2010-2011)
- Research interests
Producing sufficient quantities of high-quality, nutritious food to meet the demands of a growing population will be a major challenge facing humanity over the next few decades. In addition, global emerging issues such as climate change and the phosphorus (P) crisis are compounding the problem of food security. In fact, finding sustainable alternatives to non-renewable chemical P fertilisers is now one of the great challenges facing global agriculture.
Root-associated bacteria form part of the plant-microbiome and are a critical component in maintaining crop health, either through disease suppression or enhanced nutrient acquisition. As a result, plants actively select for beneficial bacteria, as well as fungi, through the exudation of photosynthetically-fixed carbon (C) from their roots. Achieving sustainable agricultural production requires, in part, a fundamental understanding of both crop-microbe and microbe-microbe interactions and their effects on plant microbiome functioning.
In my lab we are investigating how soil and, in some cases, marine bacteria cycle both P and C. This involves using model microorganisms in the lab for genetic studies as well as assessing how and when these processes occur in the environment. We are also beginning to investigate how soil microbes degrade molecules (polysaccharides) associated with soil formation and how this process maybe affected by climate change.
Current projects/research areas:
1) Organic P cycling in plant-associated Flavobacteria.
2) Soil polysaccharide cycling using Bacteroidetes as the model.
3)Visualisation of in situ bacterial gene expression at the root:soil interface.
4) Application of meta 'omics technologies to investigate soil/rhizosphere diversity and function.
- Crop management shapes the diversity and activity of DNA and RNA viruses in the rhizosphere. Microbiome, 10(1).
- Stimulation of distinct rhizosphere bacteria drives phosphorus and nitrogen mineralization in oilseed rape under field conditions. mSystems, 7(4).
- A widely distributed phosphate-insensitive phosphatase presents a route for rapid organophosphorus remineralization in the biosphere. Proceedings of the National Academy of Sciences, 119(5).
- Transporter characterisation reveals aminoethylphosphonate mineralisation as a key step in the marine phosphorus redox cycle. Nature Communications, 12.
- Phosphorus stress induces the synthesis of novel glycolipids in Pseudomonas aeruginosa that confer protection against a last-resort antibiotic. ISME Journal. View this article in WRRO
- A predator-prey interaction between a marine Pseudoalteromonas sp. and Gram-positive bacteria. Nature Communications, 11(1).
- Niche-adaptation in plant-associated Bacteroidetes favours specialisation in organic phosphorus mineralisation. The ISME Journal. View this article in WRRO
- Identification of dimethylamine monooxygenase in marine bacteria reveals a metabolic bottleneck in the methylated amine degradation pathway. The ISME Journal, 11(7), 1592-1601.
- The ‘known’ genetic potential for microbial communities to degrade organic phosphorus is reduced in low-pH soils. MicrobiologyOpen, 6(4), e00474-e00474.
- Comparative genomic, proteomic and exoproteomic analyses of threePseudomonasstrains reveals novel insights into the phosphorus scavenging capabilities of soil bacteria. Environmental Microbiology, 18(10), 3535-3549.
- A mechanism for bacterial transformation of dimethylsulfide to dimethylsulfoxide: a missing link in the marine organic sulfur cycle. Environmental Microbiology, 18(8), 2754-2766.
- Comparative genomics and mutagenesis analyses of choline metabolism in the marine R oseobacter clade. Environmental Microbiology, 17(12), 5048-5062.
- Trimethylamine and trimethylamine N-oxide are supplementary energy sources for a marine heterotrophic bacterium: implications for marine carbon and nitrogen cycling. The ISME Journal, 9(3), 760-769.
- Identification and characterization of trimethylamineN-oxide (TMAO) demethylase and TMAO permease inMethylocella silvestris BL2. Environmental Microbiology, 16(10), 3318-3330.
- Trimethylamine N-oxide metabolism by abundant marine heterotrophic bacteria. Proceedings of the National Academy of Sciences, 111(7), 2710-2715.
- Community-level response of coastal microbial biofilms to ocean acidification in a natural carbon dioxide vent ecosystem. Marine Pollution Bulletin, 64(5), 1063-1066.
- Ubiquitous occurrence of a dimethylsulfoniopropionate ABC transporter in abundant marine bacteria. The ISME Journal.
- 2‐aminoethylphosphonate utilisation in
BIRD‐1 is controlled by multiple master regulators. Environmental Microbiology.
- Mechanisms involved in the active secretion of CTX-M-15 β-lactamase by pathogenic E. coli ST131. Antimicrobial Agents and Chemotherapy.
- Identification of extracellular glycerophosphodiesterases in Pseudomonas and their role in soil organic phosphorus remineralisation. Scientific Reports, 7(1).
- Challenges and Approaches in Microbiome Research: From Fundamental to Applied. Frontiers in Plant Science, 9.
- Crop management shapes the diversity and activity of DNA and RNA viruses in the rhizosphere, Cold Spring Harbor Laboratory.
- Meta-exoproteomics identifies active plant-microbe interactions operating in the rhizosphere, Cold Spring Harbor Laboratory.
- A highly active phosphate-insensitive phosphatase is widely distributed in nature, Cold Spring Harbor Laboratory.
- Phosphorus stress induces the synthesis of novel glycolipids in Pseudomonas aeruginosa that confer protection against a last-resort antibiotic, Cold Spring Harbor Laboratory.
- Mechanisms involved in the active secretion of CTX-M-15 β-lactamase by pathogenic E. coli ST131, Cold Spring Harbor Laboratory.
- Aminophosphonate mineralisation is a major step in the global oceanic phosphorus redox cycle, Research Square Platform LLC.
- Novel mechanisms for phosphate acquisition in abundant rhizosphere-dwelling Bacteroidetes, Cold Spring Harbor Laboratory.
- Research group
- Sophie Groenhof (BBSRC White Rose DTP student)
- William Cutforth (MBioSci)
- Jonathan Mitchell (MBioSci)
- Lucy Rogers (MBioSci)
- Dylan Lewis (MBioSci)
- William Cadman (MBioSci)
- Polly Forbes (SURE placement)
- Rebecca Anfield (Rank Prize Fund summer placement)
- Teaching activities
- APS206 Biotechnology and Food Security (2*lectures)
- APS331 Dissertation Tutor
- APS6624 Crop Science, Biotechnology and Breeding (2*lectures)
- MBB402 Advanced Literature Review Tutor
- Professional activities and memberships
Member of the Microbiology Society